PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40302.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 293aa    MW: 32999.8 Da    PI: 10.6028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40302.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.3e-16453148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd ll  +vkq+G++ W++++++m+  ++R +k+c +rw +yl
       KHN40302.1  4 RQRWRAEEDALLRAYVKQYGPREWNLVSQRMNtpLNRDAKSCLERWKNYL 53
                     89**********************************************97 PP

2Myb_DNA-binding34.83.8e-1159103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ T+eE+ l +++ + +G++ Wk+Ia+ ++ gRt+k +  +w  +
       KHN40302.1  59 KGSLTEEEQRLVINLQATHGNK-WKKIAAQVP-GRTAKRLGKWWEVF 103
                      6788******************.*********.*****999999766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.01157IPR017930Myb domain
SMARTSM007171.1E-13355IPR001005SANT/Myb domain
SuperFamilySSF466898.44E-22498IPR009057Homeodomain-like
CDDcd001671.90E-9653No hitNo description
Gene3DG3DSA:1.10.10.609.7E-21660IPR009057Homeodomain-like
PfamPF139212.0E-14768No hitNo description
PROSITE profilePS5129417.82258108IPR017930Myb domain
SMARTSM007171.7E-958106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-1561102IPR009057Homeodomain-like
CDDcd001679.63E-763104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKDRQRWRAE EDALLRAYVK QYGPREWNLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG  60
SLTEEEQRLV INLQATHGNK WKKIAAQVPG RTAKRLGKWW EVFKEKQQRE TKGNNCTIDP  120
INDSKYEHIL ESFAEKLVKE RPSTSTSTSF VMATSNSSFL HADAPAPAPA LLPSWLSNSN  180
GTAPVRPPSP SVTLSLSPST VAAPPPWMQP PVRGQDNASP LVLGNVAPHG AVLAFGENMV  240
MSELVECCKE LDEVHHALAG HKKEAAWRLS RVELRRLGEG GRRWRKSKRK SKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-167921092B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312590.0KT031259.1 Glycine max clone HN_CCL_76 MYB/HD-like transcription factor (Glyma07g15850.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582959.10.0PREDICTED: phantastica transcription factor a isoform X1
SwissprotO809311e-114AS1_ARATH; Transcription factor AS1
TrEMBLA0A0B2S7R30.0A0A0B2S7R3_GLYSO; Transcription factor AS1
STRINGGLYMA07G15850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25973369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.14e-98MYB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]